Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.

nilearn.plotting.view_markers#

nilearn.plotting.view_markers(marker_coords, marker_color='auto', marker_size=5.0, marker_labels=None, title=None, title_fontsize=25)[source]#

Insert a 3d plot of markers in a brain into an HTML page.

Parameters

marker_coordsndarray, shape=(n_nodes, 3): The coordinates of the nodes in MNI space.
marker_colorndarray, shape=(n_nodes,), optional: colors of the markers: list of strings, hex rgb or rgba strings, rgb triplets, or rgba triplets (i.e. formats accepted by matplotlib, see https://matplotlib.org/users/colors.html#specifying-colors)
marker_sizefloat or array-like, optional: Size of the markers showing the seeds in pixels. Default=5.0.
marker_labelslist of str, shape=(n_nodes), optional: Labels for the markers: list of strings
titlestr, optional: Title for the plot.
title_fontsizeint, optional: Fontsize of the title. Default=25.

Returns

ConnectomeViewplot of the markers.

It can be saved as an html page or rendered (transparently) by the Jupyter notebook. Useful methods are :

‘resize’ to resize the plot displayed in a Jupyter notebook
‘save_as_html’ to save the plot to a file
‘open_in_browser’ to save the plot and open it in a web browser.